Import a RNA-seq dataset into Antler.

Source: R/main.R

Import a RNA-seq dataset into Antler.

Arguments

folder_path

character string. The path of the directory in which the dataset files are stored. if NULL (default), the "assayData" and "phenoData" arguments must be specified.
assayData_filename

a character string specifying the name of the file containing the expression values.
phenoData_filename

character string. The name of the file containing the cell metadata.
featData_filename

a character string specifying the name of the file containing the gene metadata.
assayData

Matrix. A matrix storing the expression values.
phenoData

Matrix. A matrix storing the sample metadata.
data_status

character string. Specifies whether the loaded expression are raw ("Raw"), normalized ("Normalized") or have been imputed ("Smoothed"). Default to "Raw".
default_gene_names

character string. Label describing the source of the gene names. Default to "ensembl_gene_id".